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    HMGB1P5 high mobility group box 1 pseudogene 5 [ Homo sapiens (human) ]

    Gene ID: 10354, updated on 10-Dec-2024

    Summary

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    Official Symbol
    HMGB1P5provided by HGNC
    Official Full Name
    high mobility group box 1 pseudogene 5provided by HGNC
    Primary source
    HGNC:HGNC:4997
    See related
    Ensembl:ENSG00000293339 AllianceGenome:HGNC:4997
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HMG-1; HMG1L5; HMGB1L5; HMGB1P2; HMGB1L15
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    Genomic context

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    See HMGB1P5 in Genome Data Viewer
    Location:
    3p24.3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (22381721..22382915)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (22386476..22387661)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (22423212..22424406)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene zinc finger protein 385D Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:21584849-21585429 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:21589175-21589999 Neighboring gene ZNF385D antisense RNA 1 Neighboring gene MPRA-validated peak4572 silencer Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68017 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68021 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68035 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68037 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68058 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68089 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68153 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68192 Neighboring gene ZNF385D antisense RNA 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:22029852-22030429 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68287 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68298 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68318 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:22347885-22348477 Neighboring gene FCRL4 pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:22843155-22843752 Neighboring gene RRBP1 pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A retropseudogene for non-histone chromosomal protein HMG-1. Stros M, et al. Biochim Biophys Acta, 1993 Feb 20. PMID 8439568
    2. Mapping and molecular characterization of five HMG1-related DNA sequences. Rogalla P, et al. Cytogenet Cell Genet, 1998. PMID 9925949
    3. The DNA sequence of human chromosome 22. Dunham I, et al. Nature, 1999 Dec 2. PMID 10591208

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • high-mobility group (nonhistone chromosomal) protein 1-like 5 pseudogene
    • high-mobility group box 1 pseudogene 2
    • high-mobility group box 1-like 15
    • high-mobility group box 1-like 5 pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_000897.6 

      Range
      101..1295
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      22381721..22382915
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      22386476..22387661
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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