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    LINC00251 long intergenic non-protein coding RNA 251 [ Homo sapiens (human) ]

    Gene ID: 552859, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC00251provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 251provided by HGNC
    Primary source
    HGNC:HGNC:31950
    See related
    Ensembl:ENSG00000280725 AllianceGenome:HGNC:31950
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C8orf25; NCRNA00251
    Expression
    Restricted expression toward testis (RPKM 1.5) See more
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    Genomic context

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    See LINC00251 in Genome Data Viewer
    Location:
    8q13.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (65161145..65180340, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (65586921..65606120, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (66073380..66092575, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375880 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:66032098-66033297 Neighboring gene NANOG hESC enhancer GRCh37_chr8:66042550-66043074 Neighboring gene NANOG hESC enhancer GRCh37_chr8:66044843-66045344 Neighboring gene NANOG hESC enhancer GRCh37_chr8:66082861-66083386 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:66084099-66085298 Neighboring gene ribosomal protein L31 pseudogene 41 Neighboring gene NANOG hESC enhancer GRCh37_chr8:66097743-66098336 Neighboring gene uncharacterized LOC105375881 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:66187065-66187864 Neighboring gene NANOG hESC enhancer GRCh37_chr8:66199936-66200450 Neighboring gene peptidylprolyl isomerase A pseudogene 86

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038901.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC104343, AW118206, BX110670
      Related
      ENST00000627569.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      65161145..65180340 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      65586921..65606120 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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