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    ARHGEF7-AS1 ARHGEF7 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100874226, updated on 10-Dec-2024

    Summary

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    Official Symbol
    ARHGEF7-AS1provided by HGNC
    Official Full Name
    ARHGEF7 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:39816
    See related
    AllianceGenome:HGNC:39816
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 3.1) See more
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    Genomic context

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    See ARHGEF7-AS1 in Genome Data Viewer
    Location:
    13q34
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (111144305..111148565, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (110374238..110378499, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (111796652..111800912, complement)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 368 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5526 Neighboring gene ARHGEF7 antisense RNA 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:111772850-111772988 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5527 Neighboring gene Rho guanine nucleotide exchange factor 7 Neighboring gene uncharacterized LOC101060553 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5528 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8024 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8025 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8026 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8027 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8028 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:111850373-111850578 Neighboring gene spalt like transcription factor 4 pseudogene 4 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8029 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111858211-111858712 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111858713-111859212 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:111864035-111864562 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111866216-111866751 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr13:111867287-111867821 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:111932258-111933457 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111948473-111948972 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8030 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8031 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111967966-111968521 Neighboring gene uncharacterized LOC105370365 Neighboring gene testis expressed 29

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • ARHGEF7 antisense RNA 1 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046516.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL353704

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      111144305..111148565 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      110374238..110378499 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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