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    Gm21976 predicted gene 21976 [ Mus musculus (house mouse) ]

    Gene ID: 102637808, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm21976provided by MGI
    Official Full Name
    predicted gene 21976provided by MGI
    Primary source
    MGI:MGI:5439445
    See related
    AllianceGenome:MGI:5439445
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm8780; EG667718
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Gm21976 in Genome Data Viewer
    Location:
    13; 13 D1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (98416322..98444185)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (98279814..98307677)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene UTP15 small subunit processome component Neighboring gene ankyrin repeat family A member 2 Neighboring gene STARR-seq mESC enhancer starr_35417 Neighboring gene STARR-seq mESC enhancer starr_35418 Neighboring gene basic transcription factor 3 Neighboring gene predicted gene 9828

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    low-density lipoprotein receptor class A domain-containing protein 1
    Names
    low-density lipoprotein receptor class A domain-containing protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      98416322..98444185
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006517799.4 → XP_006517862.1  low-density lipoprotein receptor class A domain-containing protein 1

      UniProtKB/TrEMBL
      J3QNN2
      Conserved Domains (1) summary
      cd00112
      Location:131 → 159
      LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    Nucleotide Protein
    Heading Accession and Version

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