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    Sbspon somatomedin B and thrombospondin, type 1 domain containing [ Mus musculus (house mouse) ]

    Gene ID: 226866, updated on 9-Dec-2024

    Summary

    Official Symbol
    Sbsponprovided by MGI
    Official Full Name
    somatomedin B and thrombospondin, type 1 domain containingprovided by MGI
    Primary source
    MGI:MGI:2684952
    See related
    Ensembl:ENSMUSG00000032719 AllianceGenome:MGI:2684952
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm106; Rpesp
    Summary
    Predicted to be located in extracellular region. Is expressed in reproductive system. Orthologous to human SBSPON (somatomedin B and thrombospondin type 1 domain containing). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in adrenal adult (RPKM 3.5), ovary adult (RPKM 3.2) and 18 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Sbspon in Genome Data Viewer
    Location:
    1 A3; 1 4.89 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (15924086..15962946, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (15853862..15892722, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase A pseudogene 1_109.1 Neighboring gene STARR-seq mESC enhancer starr_00325 Neighboring gene STARR-seq mESC enhancer starr_00328 Neighboring gene STARR-seq mESC enhancer starr_00329 Neighboring gene telomeric repeat binding factor 1 Neighboring gene STARR-seq mESC enhancer starr_00331 Neighboring gene STARR-seq mESC enhancer starr_00332 Neighboring gene predicted gene, 31523 Neighboring gene STARR-seq mESC enhancer starr_00334 Neighboring gene STARR-seq mESC enhancer starr_00335 Neighboring gene predicted gene 7634

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    somatomedin-B and thrombospondin type-1 domain-containing protein
    Names
    RPE-spondin

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033288.3NP_001028460.1  somatomedin-B and thrombospondin type-1 domain-containing protein precursor

      See identical proteins and their annotated locations for NP_001028460.1

      Status: PROVISIONAL

      Source sequence(s)
      AC109269
      Consensus CDS
      CCDS14828.1
      UniProtKB/Swiss-Prot
      B2RVH7, Q3UPR9
      Related
      ENSMUSP00000047730.5, ENSMUST00000040695.5

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      15924086..15962946 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)