Ly6l lymphocyte antigen 6 family member L [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Ly6lprovided by RGD
Official Full Name: lymphocyte antigen 6 family member Lprovided by RGD
Primary source: RGD:1597652
See related: AllianceGenome:RGD:1597652
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to be located in side of membrane. Predicted to be active in plasma membrane. Orthologous to human LY6L (lymphocyte antigen 6 family member L). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Lung (RPKM 211.8) and Kidney (RPKM 45.8) See more
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Genomic context

Location:: 7q34

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	7	NC_086025.1 (109101360..109103440)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	7	NC_051342.1 (107220612..107222692)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	7	NC_005106.4 (116444786..116447400)

Chromosome 7 - NC_086025.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

AA893273 (e-PCR)
- UniSTS:250051

BQ206735 (e-PCR)
- UniSTS:261622

Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info
located_in side of membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: lymphocyte antigen 6 family member L

Names: lymphocyte antigen 6 complex, locus L; lymphocyte antigen 6H; lymphocyte antigen 6L

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001408784.1 → NP_001395713.1 lymphocyte antigen 6 family member L precursor

Status: VALIDATED

Source sequence(s)

JAXUCZ010000007

UniProtKB/TrEMBL

A0A8I6G6H8