Pstk phosphoseryl-tRNA kinase [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Pstkprovided by RGD
Official Full Name: phosphoseryl-tRNA kinaseprovided by RGD
Primary source: RGD:1564300
See related: EnsemblRapid:ENSRNOG00000020605 AllianceGenome:RGD:1564300
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1564300
Summary: Predicted to enable L-seryl-tRNA(Sec) kinase activity and tRNA binding activity. Predicted to act upstream of or within selenocysteine incorporation. Orthologous to human PSTK (phosphoseryl-tRNA kinase). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Heart (RPKM 162.3), Muscle (RPKM 143.9) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 1q41

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (195587911..195598326)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (186157730..186168145)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (201950148..201960563)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

NoName (e-PCR)
- UniSTS:234605

BM386758 (e-PCR)
- UniSTS:261535

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables L-seryl-tRNA(Sec) kinase activity	ISO Inferred from Sequence Orthology more info
enables kinase activity	IBA Inferred from Biological aspect of Ancestor more info
enables tRNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables tRNA binding	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within selenocysteine incorporation	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: L-seryl-tRNA(Sec) kinase

NP_001258158.1

EC 2.7.1.164

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.