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    Tead1 TEA domain family member 1 [ Mus musculus (house mouse) ]

    Gene ID: 21676, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tead1provided by MGI
    Official Full Name
    TEA domain family member 1provided by MGI
    Primary source
    MGI:MGI:101876
    See related
    Ensembl:ENSMUSG00000055320 AllianceGenome:MGI:101876
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    TEF-1; Tcf13; TEAD-1; mTEF-1; Gtrgeo5; 2610024B07Rik; B230114H05Rik
    Summary
    Enables DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including embryonic organ development; hippo signaling; and transition between fast and slow fiber. Located in nucleus. Part of TEAD-YAP complex. Is expressed in several structures, including central nervous system; early conceptus; embryo mesenchyme; genitourinary system; and tooth. Human ortholog(s) of this gene implicated in Sveinsson chorioretinal atrophy. Orthologous to human TEAD1 (TEA domain transcription factor 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in bladder adult (RPKM 16.6), heart adult (RPKM 14.4) and 24 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Tead1 in Genome Data Viewer
    Location:
    7 F1; 7 58.8 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (112278563..112505991)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (112679356..112906784)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene parvin, alpha Neighboring gene STARR-seq mESC enhancer starr_19860 Neighboring gene parvin, alpha, opposite strand Neighboring gene STARR-seq mESC enhancer starr_19861 Neighboring gene predicted gene, 24154 Neighboring gene STARR-seq mESC enhancer starr_19863 Neighboring gene predicted gene, 40451 Neighboring gene STARR-seq mESC enhancer starr_19869 Neighboring gene STARR-seq mESC enhancer starr_19880 Neighboring gene STARR-seq mESC enhancer starr_19881 Neighboring gene Ras association (RalGDS/AF-6) domain family (N-terminal) member 10 Neighboring gene ribosomal protein L7A pseudogene

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to retinoic acid IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within embryonic heart tube morphogenesis IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in embryonic organ development IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within heart development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in hippo signaling IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within hippo signaling IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in hippo signaling ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in hippo signaling NAS
    Non-traceable Author Statement
    more info
    PubMed 
    acts_upstream_of_or_within lateral mesoderm development IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within notochord development IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within paraxial mesoderm development IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of DNA-templated transcription ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of cell growth ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of miRNA transcription ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within positive regulation of protein serine/threonine kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within positive regulation of stem cell population maintenance IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein-containing complex assembly ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within regulation of cell population proliferation IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within regulation of gene expression IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within transition between fast and slow fiber IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of TEAD-YAP complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    part_of TEAD-YAP complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of transcription regulator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of transcription regulator complex IC
    Inferred by Curator
    more info
    PubMed 
    part_of transcription regulator complex IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    transcriptional enhancer factor TEF-1
    Names
    NTEF-1
    TCF-13
    transcription factor 13

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001166584.2NP_001160056.2  transcriptional enhancer factor TEF-1 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1), which results from the use of a non-AUG (AUU) translation initiation codon.
      Source sequence(s)
      AC104930, AK140307
      Consensus CDS
      CCDS52365.1
      UniProtKB/TrEMBL
      F6QIG2, F6TBI7
      Related
      ENSMUSP00000060671.11, ENSMUST00000059768.18
      Conserved Domains (1) summary
      smart00426
      Location:3097
      TEA; TEA domain
    2. NM_001166585.2NP_001160057.2  transcriptional enhancer factor TEF-1 isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks two alternate in-frame exons in the 5' coding region compared to variant 1 and uses a non-AUG (AUU) start codon for translation initiation. The resulting isoform (3) lacks two internal protein segments compared to variant 1.
      Source sequence(s)
      AC104930, AK140307, BC060138
      Consensus CDS
      CCDS52367.1
      UniProtKB/Swiss-Prot
      P30051
      UniProtKB/TrEMBL
      F7B3M8
      Related
      ENSMUSP00000081755.7, ENSMUST00000084705.13
      Conserved Domains (1) summary
      smart00426
      Location:3097
      TEA; TEA domain
    3. NM_009346.4NP_033372.2  transcriptional enhancer factor TEF-1 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region compared to variant 1 and uses a non-AUG (AUU) start codon for translation initiation. The resulting isoform (2) lacks an internal protein segment compared to isoform 1.
      Source sequence(s)
      AC104930, AK140307, AK148375
      Consensus CDS
      CCDS52366.1
      UniProtKB/TrEMBL
      F6ZIM6, F7B3M8
      Related
      ENSMUSP00000159345.2, ENSMUST00000239404.2
      Conserved Domains (1) summary
      smart00426
      Location:3097
      TEA; TEA domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      112278563..112505991
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_175559.2: Suppressed sequence

      Description
      NM_175559.2: This RefSeq was permanently suppressed because it is primarily UTR sequence.