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    Ankef1 ankyrin repeat and EF-hand domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 319196, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ankef1provided by MGI
    Official Full Name
    ankyrin repeat and EF-hand domain containing 1provided by MGI
    Primary source
    MGI:MGI:2441685
    See related
    Ensembl:ENSMUSG00000074771 AllianceGenome:MGI:2441685
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ankrd5
    Summary
    Is expressed in eye and genitourinary system. Orthologous to human ANKEF1 (ankyrin repeat and EF-hand domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 46.7) See more
    Orthologs
    NEW
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    Genomic context

    See Ankef1 in Genome Data Viewer
    Location:
    2 F3; 2 67.46 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (136374241..136397774)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (136532321..136555854)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 32546 Neighboring gene predicted gene, 32746 Neighboring gene predicted gene, 32659 Neighboring gene STARR-seq mESC enhancer starr_05800 Neighboring gene STARR-seq mESC enhancer starr_05801 Neighboring gene synaptosomal-associated protein 25 Neighboring gene STARR-seq mESC enhancer starr_05804 Neighboring gene predicted gene, 39943

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Potential readthrough

    Included gene: Paral1

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    ankyrin repeat and EF-hand domain-containing protein 1
    Names
    ankyrin repeat domain 5
    ankyrin repeat domain-containing protein 5

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175667.4NP_783598.1  ankyrin repeat and EF-hand domain-containing protein 1

      See identical proteins and their annotated locations for NP_783598.1

      Status: PROVISIONAL

      Source sequence(s)
      BC120825
      Consensus CDS
      CCDS38249.1
      UniProtKB/Swiss-Prot
      Q0VB20, Q9D2J7
      Related
      ENSMUSP00000113881.2, ENSMUST00000121717.2
      Conserved Domains (4) summary
      cd00204
      Location:519643
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:529621
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:527555
      ANK; ANK repeat [structural motif]
      cl08302
      Location:340395
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      136374241..136397774
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)