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    TMF1P1 TATA element modulatory factor 1 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 106480320, updated on 17-Sep-2024

    Summary

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    Official Symbol
    TMF1P1provided by HGNC
    Official Full Name
    TATA element modulatory factor 1 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:51353
    See related
    AllianceGenome:HGNC:51353
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See TMF1P1 in Genome Data Viewer
    Location:
    16p13.12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (13458326..13458833)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (13495615..13496122)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (13552183..13552690)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene shisa family member 9 Neighboring gene uncharacterized LOC105371091 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:13324393-13325128 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:13325129-13325863 Neighboring gene uncharacterized LOC107984137 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:13400658-13401857 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:13445515-13446114 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:13446115-13446714 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:13446715-13447314 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:13451262-13452208 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:13461095-13461596 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10481 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10482 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10483 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10484 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7222 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:13546486-13547685 Neighboring gene NANOG hESC enhancer GRCh37_chr16:13553376-13553877 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:13677141-13677699 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:13689018-13689951 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:13700037-13700536 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:13701935-13702436 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:13702437-13702936 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:13850765-13851964 Neighboring gene uncharacterized LOC124903645 Neighboring gene uncharacterized LOC124903646

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_044428.2 

      Range
      101..608
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      13458326..13458833
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      13495615..13496122
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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