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    Trim39-ps Trim39 pseudogene [ Rattus norvegicus (Norway rat) ]

    Gene ID: 414794, updated on 17-Aug-2024

    Summary

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    Symbol
    Trim39-psprovided by RGD
    Full Name
    Trim39 pseudogeneprovided by RGD
    Primary source
    RGD:1598230
    See related
    AllianceGenome:RGD:1598230
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
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    Genomic context

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    See Trim39-ps in Genome Data Viewer
    Location:
    20p12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (1906941..1907035)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (1901728..1901822)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (2399091..2399185)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene RT1 class I, M1, gene 5 Neighboring gene RT1 class I, locus M1, gene 4 Neighboring gene RT1 class I, locus M1, gene 3, pseudogene Neighboring gene RT1 class I, locus M1, gene 2 Neighboring gene uncharacterized LOC134483841 Neighboring gene RT1 class I, locus M1, gene 1, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genomic sequence and comparative analysis of the rat major histocompatibility complex. Hurt P, et al. Genome Res, 2004 Apr. PMID 15060004, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_004447.3 

      Range
      101..195
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      1906941..1907035
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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