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    Adh1-ps1 alcohol dehydrogenase 1C (class I), gamma polypeptide, pseudogene 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 310902, updated on 27-Dec-2024

    Summary

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    Official Symbol
    Adh1-ps1provided by RGD
    Official Full Name
    alcohol dehydrogenase 1C (class I), gamma polypeptide, pseudogene 1provided by RGD
    Primary source
    RGD:1595864
    See related
    EnsemblRapid:ENSRNOG00000065373 AllianceGenome:RGD:1595864
    Gene type
    pseudo
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable all-trans-retinol dehydrogenase (NAD+) activity and zinc ion binding activity. Predicted to be involved in retinoic acid metabolic process and retinol metabolic process. Predicted to be active in cytosol. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Liver (RPKM 7.1) and Thymus (RPKM 0.5) See more
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    Genomic context

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    See Adh1-ps1 in Genome Data Viewer
    Location:
    2q44
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (229536380..229554556)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (226862836..226881171)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (243615544..243634663)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene alcohol dehydrogenase 1C (class I), gamma polypeptide Neighboring gene alcohol dehydrogenase 6A (class V) Neighboring gene uncharacterized LOC108350123 Neighboring gene alcohol dehydrogenase 6 (class V) Neighboring gene uncharacterized LOC134485688

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • alcohol dehydrogenase 1-like

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables alcohol dehydrogenase (NAD+) activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables all-trans-retinol dehydrogenase (NAD+) activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in retinoic acid metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in retinol metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      229536380..229554556
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_005501336.2 RNA Sequence

      Related
      ENSRNOT00000098035.2
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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