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MICPUCDRAFT_56027 uncharacterized protein [ Micromonas pusilla CCMP1545 ]

Gene ID: 9682152, updated on 1-Feb-2024

Summary

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Gene symbol
MICPUCDRAFT_56027
Gene description
uncharacterized protein
Locus tag
MICPUCDRAFT_56027
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Micromonas pusilla CCMP1545 (strain: CCMP1545)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Genomic context

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See MICPUCDRAFT_56027 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
2

NW_003315884.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003315884.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Worden AZ, et al. Science, 2009 Apr 10. PMID 19359590
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in COPII-coated vesicle cargo loading IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPII vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein
XP_003057168.1
  • Contains several pfam domains including a zinc finger, Sec23_trunk, Sec23_BS, Sec23_hel, and gelsolin

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003315884.1 Reference assembly

    Range
    343798..346358 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003057122.1 → XP_003057168.1  uncharacterized protein MICPUCDRAFT_56027 [Micromonas pusilla CCMP1545]

    See identical proteins and their annotated locations for XP_003057168.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7R9T6G4, C1MNT8
    Conserved Domains (6) summary
    PLN00162
    Location:1 → 779
    PLN00162; transport protein sec23; Provisional
    pfam04810
    Location:53 → 90
    zf-Sec23_Sec24; Sec23/Sec24 zinc finger
    pfam04815
    Location:524 → 616
    Sec23_helical; Sec23/Sec24 helical domain
    pfam08033
    Location:404 → 506
    Sec23_BS; Sec23/Sec24 beta-sandwich domain
    cl00057
    Location:119 → 390
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl15697
    Location:611 → 729
    ADF_gelsolin; Actin depolymerization factor/cofilin- and gelsolin-like domains
Nucleotide Protein
Heading Accession and Version

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