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VOLCADRAFT_74263 uncharacterized protein [ Volvox carteri f. nagariensis ]

Gene ID: 9618753, updated on 10-Jan-2024

Summary

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Gene symbol
VOLCADRAFT_74263
Gene description
uncharacterized protein
Locus tag
VOLCADRAFT_74263
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Volvox carteri f. nagariensis (strain: Eve, forma: nagariensis)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Chlorophyceae; CS clade; Chlamydomonadales; Volvocaceae; Volvox
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Genomic context

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See VOLCADRAFT_74263 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
10

NW_003307558.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003307558.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri. Prochnik SE, et al. Science, 2010 Jul 9. PMID 20616280, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuole organization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein
XP_002949582.1
  • predicted protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003307558.1 Reference assembly

    Range
    134650..139694
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002949536.1 → XP_002949582.1  uncharacterized protein VOLCADRAFT_74263 [Volvox carteri f. nagariensis]

    See identical proteins and their annotated locations for XP_002949582.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D8TT53
    Conserved Domains (5) summary
    smart00382
    Location:160 → 295
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:164 → 293
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:367 → 431
    Vps4_C; Vps4 C terminal oligomerization domain
    cl00299
    Location:7 → 72
    MIT; MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...
    cl21455
    Location:129 → 183
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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