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yccJ PF13993 family protein YccJ [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948930, updated on 3-Dec-2024

Summary

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Official Symbol
yccJ
Official Full Name
PF13993 family protein YccJ
Primary source
ECOCYC:EG12703
Locus tag
b1003
See related
ASAP:ABE-0003390
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0994
Summary
The initiating methionine is cleaved . [More information is available at EcoCyc: EG12703].
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Genomic context

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Sequence:
NC_000913.3 (1066864..1067091, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YccE Neighboring gene glucose-1-phosphatase Neighboring gene NAD(P)H:quinone oxidoreductase Neighboring gene stress-induced bacterial acidophilic repeat motifs-containing protein YmdF

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nucleotide sequence and transcriptional analysis of the Escherichia coli agp gene encoding periplasmic acid glucose-1-phosphatase. Pradel E, et al. J Bacteriol, 1990 Feb. PMID 2153660, Free PMC Article
  2. Detection of new genes in a bacterial genome using Markov models for three gene classes. Borodovsky M, et al. Nucleic Acids Res, 1995 Sep 11. PMID 7567469, Free PMC Article
  3. Small genes/gene-products in Escherichia coli K-12. Wasinger VC, et al. FEMS Microbiol Lett, 1998 Dec 15. PMID 9868784
  4. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. N-terminus verified by Edman degradation on mature peptide
    Title: Small genes/gene-products in Escherichia coli K-12.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
PF13993 family protein YccJ

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1066864..1067091 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415523.1 PF13993 family protein YccJ [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415523.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2X1IX23
    Conserved Domains (1) summary
    PRK10174
    Location:1 → 75
    PRK10174; hypothetical protein; Provisional
Nucleotide Protein
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