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yjdC putative DNA-binding transcriptional regulator YjdC [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948650, updated on 3-Dec-2024

Summary

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Official Symbol
yjdC
Official Full Name
putative DNA-binding transcriptional regulator YjdC
Primary source
ECOCYC:EG12176
Locus tag
b4135
See related
ASAP:ABE-0013537
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
cutA3; ECK4129
Summary
TetR family. [More information is available at EcoGene: EG12176].
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Genomic context

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Sequence:
NC_000913.3 (4362733..4363308, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene tRNA-Phe Neighboring gene thiol-disulfide exchange protein DsbD Neighboring gene copper binding protein CutA Neighboring gene C4-dicarboxylate transporter DcuA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Pathoadaptive mutations that enhance virulence: genetic organization of the cadA regions of Shigella spp. Day WA Jr, et al. Infect Immun, 2001 Dec. PMID 11705922, Free PMC Article
  2. Identification of elements involved in transcriptional regulation of the Escherichia coli cad operon by external pH. Watson N, et al. J Bacteriol, 1992 Jan. PMID 1370290, Free PMC Article
  3. Multiple stressor-induced proteome responses of Escherichia coli BL21(DE3). Han KY, et al. J Proteome Res, 2008 May. PMID 18363324
  4. Molecular genetics of a chromosomal locus involved in copper tolerance in Escherichia coli K-12. Fong ST, et al. Mol Microbiol, 1995 Mar. PMID 7623666
  5. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative DNA-binding transcriptional regulator YjdC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4362733..4363308 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418558.2 putative DNA-binding transcriptional regulator YjdC [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418558.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376FVH8, A0A377CDH0, A0A8S0G4F4
    Conserved Domains (1) summary
    PRK11640
    Location:1 → 191
    PRK11640; putative transcriptional regulator; Provisional
Nucleotide Protein
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