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yjbR PF04237 family protein YjbR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948560, updated on 3-Dec-2024

Summary

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Official Symbol
yjbR
Official Full Name
PF04237 family protein YjbR
Primary source
ECOCYC:EG11936
Locus tag
b4057
See related
ASAP:ABE-0013288
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4049
Summary
YjbR double wings NMR structure resembles the phage T4 MotA DNA binding C-terminal domain (Singarapu, 2007). [More information is available at EcoGene: EG11936]. A solution structure of YjbR has been determined, and structural similarity to the "double wing" DNA binding motif was found . [More information is available at EcoCyc: EG11936].
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Genomic context

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Sequence:
NC_000913.3 (4270658..4271014)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene acid phosphatase/phosphotransferase Neighboring gene PF01894 family protein YjbQ Neighboring gene UvrABC excision nuclease subunit A Neighboring gene ssDNA-binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The curli biosynthesis regulator CsgD co-ordinates the expression of both positive and negative determinants for biofilm formation in Escherichia coli. Brombacher E, et al. Microbiology (Reading), 2003 Oct. PMID 14523117
  2. Small genes/gene-products in Escherichia coli K-12. Wasinger VC, et al. FEMS Microbiol Lett, 1998 Dec 15. PMID 9868784
  3. Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes. Blattner FR, et al. Nucleic Acids Res, 1993 Nov 25. PMID 8265357, Free PMC Article
  4. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
  5. NMR structure of protein yjbR from Escherichia coli reveals 'double-wing' DNA binding motif. Singarapu KK, et al. Proteins, 2007 May 1. PMID 17266124

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. N-terminus verified by Edman degradation on complete protein
    Title: Small genes/gene-products in Escherichia coli K-12.
  2. Molecular models for the protein structure are presented from 1h, 13C, and 15N nmr.
    Title: NMR structure of protein yjbR from Escherichia coli reveals 'double-wing' DNA binding motif.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
PF04237 family protein YjbR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4270658..4271014
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418481.1 PF04237 family protein YjbR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418481.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2W6PAT3
    Conserved Domains (1) summary
    COG2315
    Location:1 → 117
    MmcQ; Predicted DNA-binding protein with double-wing structural motif, MmcQ/YjbR family [Transcription]
Nucleotide Protein
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