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yhjV putative transporter YhjV [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948057, updated on 17-Dec-2024

Summary

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Official Symbol
yhjV
Official Full Name
putative transporter YhjV
Primary source
ECOCYC:EG12266
Locus tag
b3539
See related
ASAP:ABE-0011562
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3526
Summary
HAAAP family. [More information is available at EcoGene: EG12266]. The YhjV protein is an uncharacterised member of the STP family of transporters. [More information is available at EcoCyc: EG12266].
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Genomic context

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Sequence:
NC_000913.3 (3700563..3701834)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene small toxic polypeptide LdrD Neighboring gene ncRNA Neighboring gene dipeptide ABC transporter ATP binding subunit DppF Neighboring gene dipeptide ABC transporter ATP binding subunit DppD Neighboring gene dipeptide ABC transporter membrane subunit DppC

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Screen for genes involved in radiation survival of Escherichia coli and construction of a reference database. Sargentini NJ, et al. Mutat Res, 2016 Nov-Dec. PMID 27718375
  2. Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes. Sofia HJ, et al. Nucleic Acids Res, 1994 Jul 11. PMID 8041620, Free PMC Article
  3. Experimentally based topology models for E. coli inner membrane proteins. Rapp M, et al. Protein Sci, 2004 Apr. PMID 15044727, Free PMC Article
  4. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
  5. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in amino acid transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in amino acid transport IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within response to radiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative transporter YhjV

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3700563..3701834
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417996.1 putative transporter YhjV [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417996.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376M0U3
    Conserved Domains (1) summary
    COG0814
    Location:11 → 411
    SdaC; Amino acid permease [Amino acid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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