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pdeH c-di-GMP phosphodiesterase PdeH [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948042, updated on 3-Dec-2024

Summary

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Official Symbol
pdeH
Official Full Name
c-di-GMP phosphodiesterase PdeH
Primary source
ECOCYC:EG12252
Locus tag
b3525
See related
ASAP:ABE-0011515
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3510; yhjH
Summary
Overexpressed Salmonella typhimurium YhjH (STM3611) enhances motitility, counteracts cellulose biosynthesis and the rdar phenotype, and mediates cyclic-di-GMP degradation. [More information is available at EcoGene: EG12252]. YhjH is a c-di-GMP phosphodiesterase involved in regulation of the switch from flagellar motility to sessile behavior and curli expression at the end of exponential growth . [More information is available at EcoCyc: EG12252].
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Genomic context

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Sequence:
NC_000913.3 (3678420..3679187, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative transporter YhjE Neighboring gene AsmA family protein YhjG Neighboring gene 2-dehydro-3-deoxygluconokinase Neighboring gene peptidase M16 family protein YhjJ

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of Salmonella enterica serovar Typhimurium genes associated with growth suppression in stationary-phase nutrient broth cultures and in the chicken intestine. Rychlik I, et al. Arch Microbiol, 2002 Dec. PMID 12420160
  2. Two novel flagellar components and H-NS are involved in the motor function of Escherichia coli. Ko M, et al. J Mol Biol, 2000 Oct 27. PMID 11031114
  3. The flagellar sigma factor FliA regulates adhesion and invasion of Crohn disease-associated Escherichia coli via a cyclic dimeric GMP-dependent pathway. Claret L, et al. J Biol Chem, 2007 Nov 16. PMID 17827157
  4. A comprehensive genetic characterization of bacterial motility. Girgis HS, et al. PLoS Genet, 2007 Sep. PMID 17941710, Free PMC Article
  5. Gene expression patterns and differential input into curli fimbriae regulation of all GGDEF/EAL domain proteins in Escherichia coli. Sommerfeldt N, et al. Microbiology (Reading), 2009 Apr. PMID 19332833

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables cyclic-guanylate-specific phosphodiesterase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables cyclic-guanylate-specific phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of bacterial-type flagellum-dependent cell motility IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
c-di-GMP phosphodiesterase PdeH
NP_417982.2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3678420..3679187 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417982.2 c-di-GMP phosphodiesterase PdeH [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417982.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376M2F6
    Conserved Domains (1) summary
    PRK11596
    Location:1 → 255
    PRK11596; cyclic-di-GMP phosphodiesterase; Provisional
Nucleotide Protein
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