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yhdZ putative ABC transporter ATP-binding subunit YhdZ [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947763, updated on 3-Dec-2024

Summary

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Official Symbol
yhdZ
Official Full Name
putative ABC transporter ATP-binding subunit YhdZ
Primary source
ECOCYC:EG12837
Locus tag
b3271
See related
ASAP:ABE-0010738
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3258
Summary
Putative ABC transporter YhdWXYZ has an unknown substrate and yhdW' is an apparent pseudogene. [More information is available at EcoGene: EG12837]. Yhdz is a periplasmic binding component of a predicted amino acid ABC transporter. [More information is available at EcoCyc: EG12837].
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Genomic context

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Sequence:
NC_000913.3 (3422436..3423194)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative ABC transporter membrane subunit YhdX Neighboring gene putative ABC transporter membrane subunit YhdY Neighboring gene 5S ribosomal RNA Neighboring gene tRNA-Thr

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ATP-binding cassette transporters in Escherichia coli. Moussatova A, et al. Biochim Biophys Acta, 2008 Sep. PMID 18634750
  2. Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation. Zimmer DP, et al. Proc Natl Acad Sci U S A, 2000 Dec 19. PMID 11121068, Free PMC Article
  3. The Escherichia coli ATP-binding cassette (ABC) proteins. Linton KJ, et al. Mol Microbiol, 1998 Apr. PMID 9593292
  4. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, et al. J Mol Evol, 1999 Jan. PMID 9873074
  5. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables ABC-type amino acid transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP binding ISM
Inferred from Sequence Model
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in amino acid transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in amino acid transport IEA
Inferred from Electronic Annotation
more info
  
involved_in peptide transport NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex IC
Inferred by Curator
more info
 PubMed 
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
located_in membrane NAS
Non-traceable Author Statement
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative ABC transporter ATP-binding subunit YhdZ

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3422436..3423194
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417737.1 putative ABC transporter ATP-binding subunit YhdZ [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417737.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAN5ZJH6
    Conserved Domains (1) summary
    COG1126
    Location:11 → 250
    GlnQ; ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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