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rnk nucleoside diphosphate kinase regulator [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947546, updated on 3-Dec-2024

Summary

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Official Symbol
rnk
Official Full Name
nucleoside diphosphate kinase regulator
Primary source
ECOCYC:G6337
Locus tag
b0610
See related
ASAP:ABE-0002104
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0603
Summary
A mutation in rnk leads to a significant reduction in the level of nucleoside diphosphate kinase (Ndk) in Escherichia coli . [More information is available at EcoCyc: G6337].
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Genomic context

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Sequence:
NC_000913.3 (643557..643967, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative Zn(2(+))-dependent alcohol dehydrogenase YbdR Neighboring gene protein YldA Neighboring gene RNase I Neighboring gene citrate:succinate antiporter

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Escherichia coli genes sspA and rnk can functionally replace the Pseudomonas aeruginosa alginate regulatory gene algR2. Schlictman D, et al. Mol Microbiol, 1995 Apr. PMID 7565093
  2. Regulation of nucleoside diphosphate kinase and an alternative kinase in Escherichia coli: role of the sspA and rnk genes in nucleoside triphosphate formation. Shankar S, et al. Mol Microbiol, 1995 Sep. PMID 8596442
  3. Participation of Rho-dependent transcription termination in oxidative stress sensitivity caused by an rpoB mutation. Kawamura N, et al. Genes Cells, 2005 May. PMID 15836776
  4. Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Qin ZS, et al. Nat Biotechnol, 2003 Apr. PMID 12627170
  5. Factors influencing the identification of transcription factor binding sites by cross-species comparison. McCue LA, et al. Genome Res, 2002 Oct. PMID 12368244, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription elongation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of DNA-templated transcription elongation IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
nucleoside diphosphate kinase regulator

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    643557..643967 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415143.1 nucleoside diphosphate kinase regulator [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415143.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376K3M2, A0A5B9AKA4
    Conserved Domains (1) summary
    PRK05753
    Location:1 → 136
    PRK05753; nucleoside diphosphate kinase regulator; Provisional
Nucleotide Protein
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