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yqeI putative transcriptional regulator YqeI [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947327, updated on 3-Dec-2024

Summary

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Official Symbol
yqeI
Official Full Name
putative transcriptional regulator YqeI
Primary source
ECOCYC:G7467
Locus tag
b2847
See related
ASAP:ABE-0009352
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2845
Summary
This gene is a remnant of the type three secretion system (T3SS) pathogenicity island ETT2. [More information is available at EcoGene: EG13100]. yqeI is located within a remnant of an ETT2 (type III secretion system) pathogenicity island that is fully present in pathogenic strains such as Escherichia coli O157:H7 and at least partially present in most sequenced Escherichia coli and Shigella strains . [More information is available at EcoCyc: G7467].
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Genomic context

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Sequence:
NC_000913.3 (2988502..2989311)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative transporter YqeG Neighboring gene putative LuxR family transcriptional regulator YqeH Neighboring gene protein YqeJ Neighboring gene uncharacterized protein YqeL Neighboring gene protein YqeK

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition. Ren CP, et al. J Bacteriol, 2004 Jun. PMID 15150243, Free PMC Article
  2. A degenerate type III secretion system from septicemic Escherichia coli contributes to pathogenesis. Ideses D, et al. J Bacteriol, 2005 Dec. PMID 16291689, Free PMC Article
  3. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
  4. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
  5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in phosphorelay signal transduction system IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

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Preferred Names
putative transcriptional regulator YqeI

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2988502..2989311
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417324.1 putative transcriptional regulator YqeI [Escherichia coli str. K-12 substr. MG1655]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6M9WZ08
    Conserved Domains (1) summary
    COG3710
    Location:1 → 149
    CadC1; DNA-binding winged helix-turn-helix (wHTH) domain [Transcription]
Nucleotide Protein
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