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ygdQ PF03741 family inner membrane protein YgdQ [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947295, updated on 3-Dec-2024

Summary

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Official Symbol
ygdQ
Official Full Name
PF03741 family inner membrane protein YgdQ
Primary source
ECOCYC:G7460
Locus tag
b2832
See related
ASAP:ABE-0009290
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2828
Summary
Membrane topology predictions using experimentally determined C terminus locations indicate that YgdQ has 7 transmembrane helices and the C-terminus is located in the cytoplasm . [More information is available at EcoCyc: G7460].
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Genomic context

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Sequence:
NC_000913.3 (2970420..2971133)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene YgdT Neighboring gene DNA mismatch repair protein MutH Neighboring gene DUF903 domain-containing lipoprotein YgdR Neighboring gene putative NADP(H)-dependent aldo-keto reductase Tas

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A PhoQ/P-regulated small RNA regulates sensitivity of Escherichia coli to antimicrobial peptides. Moon K, et al. Mol Microbiol, 2009 Dec. PMID 19889087, Free PMC Article
  2. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
  3. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
  4. Experimentally based topology models for E. coli inner membrane proteins. Rapp M, et al. Protein Sci, 2004 Apr. PMID 15044727, Free PMC Article
  5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PF03741 family inner membrane protein YgdQ

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2970420..2971133
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417309.1 PF03741 family inner membrane protein YgdQ [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417309.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6D0IDM0
    Conserved Domains (1) summary
    COG0861
    Location:1 → 236
    TerC; Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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