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syd SecY-interacting protein [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947271, updated on 3-Dec-2024

Summary

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Official Symbol
syd
Official Full Name
SecY-interacting protein
Primary source
ECOCYC:G7451
Locus tag
b2793
See related
ASAP:ABE-0009154
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2788; ydr
Summary
Syd interacts with SecY, a membrane-embedded subunit of protein translocase . [More information is available at EcoCyc: G7451].
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Genomic context

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Sequence:
NC_000913.3 (2924735..2925280, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene tRNA pseudouridine(65) synthase Neighboring gene DUF446 domain-containing protein YqcC Neighboring gene ncRNA Neighboring gene 7-cyano-7-deazaguanine reductase Neighboring gene nucleotide 5'-monophosphate nucleosidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure, binding, and activity of Syd, a SecY-interacting protein. Dalal K, et al. J Biol Chem, 2009 Mar 20. PMID 19139097, Free PMC Article
  2. Syd, a SecY-interacting protein, excludes SecA from the SecYE complex with an altered SecY24 subunit. Matsuo E, et al. J Biol Chem, 1998 Jul 24. PMID 9668058
  3. Genetic analysis of an essential cytoplasmic domain of Escherichia coli SecY based on resistance to Syd, a SecY-interacting protein. Matsuo E, et al. Mol Gen Genet, 1998 May. PMID 9645430
  4. Product of a new gene, syd, functionally interacts with SecY when overproduced in Escherichia coli. Shimoike T, et al. J Biol Chem, 1995 Mar 10. PMID 7890670
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. N-terminus verified by Edman degradation on complete protein
    Title: Product of a new gene, syd, functionally interacts with SecY when overproduced in Escherichia coli.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of protein-containing complex assembly IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
colocalizes_with cytoplasmic side of plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasmic side of plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SecY-interacting protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2924735..2925280 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417273.1 SecY-interacting protein [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417273.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5B9AQD8, A0AAN3TS08
    Conserved Domains (1) summary
    PRK04968
    Location:5 → 181
    PRK04968; SecY interacting protein Syd; Provisional
Nucleotide Protein
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