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ppnN nucleotide 5'-monophosphate nucleosidase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947266, updated on 3-Dec-2024

Summary

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Official Symbol
ppnN
Official Full Name
nucleotide 5'-monophosphate nucleosidase
Primary source
ECOCYC:EG12373
Locus tag
b2795
See related
ASAP:ABE-0009166
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2790; ygdH
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Genomic context

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Sequence:
NC_000913.3 (2926308..2927672)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene SecY-interacting protein Neighboring gene 7-cyano-7-deazaguanine reductase Neighboring gene L-serine:H(+) symporter SdaC Neighboring gene L-serine deaminase II

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel (p)ppGpp Binding and Metabolizing Proteins of Escherichia coli. Zhang Y, et al. mBio, 2018 Mar 6. PMID 29511080, Free PMC Article
  2. Nontargeted in vitro metabolomics for high-throughput identification of novel enzymes in Escherichia coli. Sévin DC, et al. Nat Methods, 2017 Feb. PMID 27941785
  3. (p)ppGpp Regulates a Bacterial Nucleosidase by an Allosteric Two-Domain Switch. Zhang YE, et al. Mol Cell, 2019 Jun 20. PMID 31023582
  4. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
  5. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables AMP nucleosidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables AMP nucleosidase activity IEA
Inferred from Electronic Annotation
more info
  
enables guanosine tetraphosphate binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables identical protein binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables inosinate nucleosidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables inosinate nucleosidase activity IEA
Inferred from Electronic Annotation
more info
  
enables pyrimidine-5'-nucleotide nucleosidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables pyrimidine-5'-nucleotide nucleosidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein homotetramerization IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
part_of protein-containing complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
nucleotide 5'-monophosphate nucleosidase
NP_417275.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2926308..2927672
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417275.1 nucleotide 5'-monophosphate nucleosidase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417275.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0H2Z2D7
    Conserved Domains (3) summary
    COG1611
    Location:136 → 348
    YgdH; Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
    pfam11892
    Location:333 → 453
    DUF3412; Domain of unknown function (DUF3412)
    pfam14793
    Location:3 → 111
    DUF4478; Domain of unknown function (DUF4478)
Nucleotide Protein
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