U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

yfjY RadC-like JAB domain-containing protein YfjY [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947125, updated on 3-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
yfjY
Official Full Name
RadC-like JAB domain-containing protein YfjY
Primary source
ECOCYC:G7379
Locus tag
b2644
See related
ASAP:ABE-0008706
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2640
Summary
When placed on a multicopy plasmid, this gene creates a mutator phenotype . [More information is available at EcoCyc: G7379].
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_000913.3 (2776386..2776868)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene putative antirestriction protein YfjX Neighboring gene DUF987 domain-containing protein YpjJ Neighboring gene putative antitoxin of the YpjF-YfjZ toxin-antitoxin system

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Single-cell analysis reveals that cryptic prophage protease LfgB protects Escherichia coli during oxidative stress by cleaving antitoxin MqsA. Fernández-García L, et al. Microbiol Spectr, 2024 Feb 6. PMID 38206055, Free PMC Article
  2. Identification of mutator genes and mutational pathways in Escherichia coli using a multicopy cloning approach. Yang H, et al. Mol Microbiol, 2004 Jul. PMID 15225322
  3. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metallopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to heat IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within cellular response to reactive oxygen species IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within cellular stress response to acidic pH IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
RadC-like JAB domain-containing protein YfjY

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2776386..2776868
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417131.1 RadC-like JAB domain-containing protein YfjY [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417131.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P52140
    Conserved Domains (1) summary
    COG2003
    Location:1 → 160
    RadC; DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif [Replication, recombination and repair]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.