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rimM ribosome maturation factor RimM [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947101, updated on 17-Dec-2024

Summary

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Official Symbol
rimM
Official Full Name
ribosome maturation factor RimM
Primary source
ECOCYC:EG11153
Locus tag
b2608
See related
ASAP:ABE-0008579
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2605; yfjA
Summary
other PDB (T. thermophilus): [More information is available at EcoGene: EG11153]. RimM may play a role in the maturation of the 30S ribosomal subunit, or possibly in initiation of translation . [More information is available at EcoCyc: EG11153].
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Genomic context

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Sequence:
NC_000913.3 (2745370..2745918, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene 50S ribosomal subunit protein L19 Neighboring gene tRNA m(1)G37 methyltransferase Neighboring gene 30S ribosomal subunit protein S16 Neighboring gene signal recognition particle protein component

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A regulatory element within a gene of a ribosomal protein operon of Escherichia coli negatively controls expression by decreasing the translational efficiency. Wikström PM, et al. Mol Gen Genet, 1989 Nov. PMID 2516239
  2. Hybrid protein between ribosomal protein S16 and RimM of Escherichia coli retains the ribosome maturation function of both proteins. Lövgren JM, et al. J Bacteriol, 2001 Sep. PMID 11514519, Free PMC Article
  3. Importance of mRNA folding and start codon accessibility in the expression of genes in a ribosomal protein operon of Escherichia coli. Wikström PM, et al. J Mol Biol, 1992 Apr 20. PMID 1569581
  4. Noncoordinate translation-level regulation of ribosomal and nonribosomal protein genes in the Escherichia coli trmD operon. Wikström PM, et al. J Bacteriol, 1988 Jul. PMID 3290194, Free PMC Article
  5. A novel ribosome-associated protein is important for efficient translation in Escherichia coli. Bylund GO, et al. J Bacteriol, 1997 Jul. PMID 9226267, Free PMC Article

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
  
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within maturation of SSU-rRNA IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ribosomal small subunit assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in ribosomal small subunit biogenesis IEA
Inferred from Electronic Annotation
more info
  
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ribosome maturation factor RimM

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2745370..2745918 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417099.4 ribosome maturation factor RimM [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417099.4

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    B1LPB5, B5Z227
    UniProtKB/TrEMBL
    A0A066ST15, A0A0H3PS84, A0A829KZG1, A0A8E0KW66, A0AAN3V5C2, W1F909
    Conserved Domains (1) summary
    PRK00122
    Location:10 → 182
    rimM; 16S rRNA-processing protein RimM; Provisional
Nucleotide Protein
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