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napF ferredoxin-type protein [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946813, updated on 3-Dec-2024

Summary

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Official Symbol
napF
Official Full Name
ferredoxin-type protein
Primary source
ECOCYC:EG12068
Locus tag
b2208
See related
ASAP:ABE-0007293
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2200; yojG
Summary
NapF is located in the cytoplasm and physically interacts with NapA (Nilavongse, 2006). [More information is available at EcoGene: EG12068]. The napF gene encodes a predicted 3Fe-4S iron sulfur protein. [More information is available at EcoCyc: EG12068].
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Genomic context

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Sequence:
NC_000913.3 (2303003..2303497, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene ferredoxin-type protein NapH Neighboring gene ferredoxin-type protein NapG Neighboring gene periplasmic nitrate reductase subunit NapA Neighboring gene NapA signal peptide-binding chaperone NapD Neighboring gene uncharacterized protein YojO Neighboring gene serine protease inhibitor ecotin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Catabolite repression control of napF (periplasmic nitrate reductase) operon expression in Escherichia coli K-12. Stewart V, et al. J Bacteriol, 2009 Feb. PMID 19060147, Free PMC Article
  2. Dual overlapping promoters control napF (periplasmic nitrate reductase) operon expression in Escherichia coli K-12. Stewart V, et al. J Bacteriol, 2003 Oct. PMID 13129959, Free PMC Article
  3. The napF and narG nitrate reductase operons in Escherichia coli are differentially expressed in response to submicromolar concentrations of nitrate but not nitrite. Wang H, et al. J Bacteriol, 1999 Sep. PMID 10464201, Free PMC Article
  4. Sequence-specific binding to a subset of IscR-regulated promoters does not require IscR Fe-S cluster ligation. Nesbit AD, et al. J Mol Biol, 2009 Mar 20. PMID 19361432, Free PMC Article
  5. Substitutions at auxiliary operator O3 enhance repression by nitrate-responsive regulator NarL at synthetic lac control regions in Escherichia coli K-12. Stewart V, et al. J Bacteriol, 2008 Jan. PMID 17965164, Free PMC Article

See all (24) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within response to oxidative stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ferredoxin-type protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2303003..2303497 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416712.1 ferredoxin-type protein [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416712.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2W6P4F5
    Conserved Domains (1) summary
    PRK10194
    Location:2 → 164
    PRK10194; ferredoxin-type protein NapF
Nucleotide Protein
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