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yejK nucleoid-associated protein YejK [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946690, updated on 3-Dec-2024

Summary

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Official Symbol
yejK
Official Full Name
nucleoid-associated protein YejK
Primary source
ECOCYC:EG12048
Locus tag
b2186
See related
ASAP:ABE-0007234
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2180; ndpA
Summary
YejK is associated with chromosomal DNA isolated as "spermidine nucleoids" . [More information is available at EcoCyc: EG12048].
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Genomic context

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Sequence:
NC_000913.3 (2282940..2283947, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative DNA repair helicase RadD Neighboring gene 50S ribosomal subunit protein L25 Neighboring gene DUF1414 domain-containing protein YejL Neighboring gene lipopolysaccharide signal transducer LapC

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure of the E. coli nucleoid-associated protein YejK reveals a novel DNA binding clamp. Schumacher MA, et al. Nucleic Acids Res, 2024 Jul 8. PMID 38832628, Free PMC Article
  2. Characterization of the nucleoid-associated protein YejK. Lee C, et al. J Biol Chem, 2013 Nov 1. PMID 24043617, Free PMC Article
  3. Identification of two new proteins in spermidine nucleoids isolated from Escherichia coli. Murphy LD, et al. J Bacteriol, 1999 Jun. PMID 10368163, Free PMC Article
  4. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Structure of the E. coli nucleoid-associated protein YejK reveals a novel DNA binding clamp.
    Title: Structure of the E. coli nucleoid-associated protein YejK reveals a novel DNA binding clamp.
  2. N-terminus verified by Edman degradation on mature peptide
    Title: Identification of two new proteins in spermidine nucleoids isolated from Escherichia coli.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables double-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables double-stranded DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables identical protein binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables single-stranded RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables single-stranded RNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
is_active_in bacterial nucleoid IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in bacterial nucleoid IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoid IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
nucleoid-associated protein YejK

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2282940..2283947 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416691.1 nucleoid-associated protein YejK [Escherichia coli str. K-12 substr. MG1655]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2X1K2U5, A0A895NS13
    Conserved Domains (1) summary
    PRK00378
    Location:1 → 334
    PRK00378; nucleoid-associated protein NdpA; Validated
Nucleotide Protein
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Gene LinkOut

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