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yejF putative oligopeptide ABC transporter ATP binding subunit YejF [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946689, updated on 3-Dec-2024

Summary

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Official Symbol
yejF
Official Full Name
putative oligopeptide ABC transporter ATP binding subunit YejF
Primary source
ECOCYC:EG12041
Locus tag
b2180
See related
ASAP:ABE-0007212
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2174
Summary
YejABEF microcin C ABC transport system. [More information is available at EcoGene: EG12041]. YejF is an ATP-binding component of the YejA/YejB/YejE/YejF ABC transporter. [More information is available at EcoCyc: EG12041].
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Genomic context

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Sequence:
NC_000913.3 (2276300..2277889)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative oligopeptide ABC transporter membrane subunit YejB Neighboring gene putative oligopeptide ABC transporter membrane subunit YejE Neighboring gene protein YejG Neighboring gene multidrug efflux pump Bcr

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of peptide chain length and constituency requirements for YejABEF-mediated uptake of microcin C analogues. Vondenhoff GH, et al. J Bacteriol, 2011 Jul. PMID 21602342, Free PMC Article
  2. The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C. Novikova M, et al. J Bacteriol, 2007 Nov. PMID 17873039, Free PMC Article
  3. Gene fusions and gene duplications: relevance to genomic annotation and functional analysis. Serres MH, et al. BMC Genomics, 2005 Mar 9. PMID 15757509, Free PMC Article
  4. Identification of Escherichia coli genes that are specifically expressed in a murine model of septicemic infection. Khan MA, et al. Infect Immun, 2002 Jul. PMID 12065479, Free PMC Article
  5. A small bacterial RNA regulates a putative ABC transporter. Antal M, et al. J Biol Chem, 2005 Mar 4. PMID 15618228

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. An minimal peptide chain length of 6 amino acids and an N-terminal formyl-methionyl-arginyl sequence of microcin C are required for YejABEF-mediated uptake.
    Title: Characterization of peptide chain length and constituency requirements for YejABEF-mediated uptake of microcin C analogues.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP binding ISM
Inferred from Sequence Model
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATPase-coupled transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in microcin transport IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within microcin transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in oligopeptide transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within oligopeptide transmembrane transport IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in peptide transport IEA
Inferred from Electronic Annotation
more info
  
involved_in peptide transport NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
located_in membrane NAS
Non-traceable Author Statement
more info
 PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
putative oligopeptide ABC transporter ATP binding subunit YejF
NP_416685.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2276300..2277889
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416685.1 putative oligopeptide ABC transporter ATP binding subunit YejF [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416685.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6N8NCG1
    Conserved Domains (1) summary
    PRK15134
    Location:1 → 529
    PRK15134; microcin C ABC transporter ATP-binding protein YejF; Provisional
Nucleotide Protein
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