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ycfJ PF05433 family protein YcfJ [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945977, updated on 17-Dec-2024

Summary

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Official Symbol
ycfJ
Official Full Name
PF05433 family protein YcfJ
Primary source
ECOCYC:EG12444
Locus tag
b1110
See related
ASAP:ABE-0003752
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1096
Summary
YcfJ is homologous to UmoD (P.m.), which upregulates flhDC in P. mirabilis. [More information is available at EcoGene: EG12444]. YcfJ has similarity to Proteus mirabilis UmoD, which is involved in in flagellar synthesis, swarming, and cell elongation . [More information is available at EcoCyc: EG12444].
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Genomic context

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Sequence:
NC_000913.3 (1167599..1168138)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene PF05728 family protein YcfP Neighboring gene NADH:quinone oxidoreductase II Neighboring gene DNA-binding transcriptional repressor ComR Neighboring gene DUF1471 domain-containing multiple stress resistance outer membrane protein BhsA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nucleotide sequence coding for the respiratory NADH dehydrogenase of Escherichia coli. UUG initiation codon. Young IG, et al. Eur J Biochem, 1981 May. PMID 6265208
  2. Novel genes that upregulate the Proteus mirabilis flhDC master operon controlling flagellar biogenesis and swarming. Dufour A, et al. Mol Microbiol, 1998 Aug. PMID 9723914
  3. Intrinsic and extrinsic approaches for detecting genes in a bacterial genome. Borodovsky M, et al. Nucleic Acids Res, 1994 Nov 11. PMID 7984428, Free PMC Article
  4. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
  5. Global impact of mature biofilm lifestyle on Escherichia coli K-12 gene expression. Beloin C, et al. Mol Microbiol, 2004 Feb. PMID 14731270

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
involved_in regulation of single-species biofilm formation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within regulation of single-species biofilm formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in outer membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

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Preferred Names
PF05433 family protein YcfJ

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1167599..1168138
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415628.1 PF05433 family protein YcfJ [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415628.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6M9WX94
    Conserved Domains (1) summary
    PRK11280
    Location:7 → 176
    PRK11280; hypothetical protein; Provisional
Nucleotide Protein
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