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ydjA putative oxidoreductase YdjA [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945964, updated on 17-Dec-2024

Summary

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Official Symbol
ydjA
Official Full Name
putative oxidoreductase YdjA
Primary source
ECOCYC:EG11134
Locus tag
b1765
See related
ASAP:ABE-0005875
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1763
Summary
Binds TrxA (Kumar, 2004). nfsA, nfsB, rutE, and ydjA are paralogs. [More information is available at EcoGene: EG11134]. Crystal structures of YdjA alone and with the FMN cofactor have been solved. [More information is available at EcoCyc: EG11134].
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Genomic context

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Sequence:
NC_000913.3 (1848125..1848676, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA topoisomerase III Neighboring gene selenide, water dikinase Neighboring gene protease IV, a signal peptide peptidase Neighboring gene L-asparaginase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Crystal structure of a minimal nitroreductase, ydjA, from Escherichia coli K12 with and without FMN cofactor. Choi JW, et al. J Mol Biol, 2008 Mar 14. PMID 18241886
  2. Crystallization and preliminary X-ray diffraction analysis of ydjA, a minimal nitroreductase from Escherichia coli K12. Choi JW, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun, 2007 Dec 1. PMID 18084095, Free PMC Article
  3. Discovery and evaluation of Escherichia coli nitroreductases that activate the anti-cancer prodrug CB1954. Prosser GA, et al. Biochem Pharmacol, 2010 Mar 1. PMID 19852945
  4. Expression and operon structure of the sel genes of Escherichia coli and identification of a third selenium-containing formate dehydrogenase isoenzyme. Sawers G, et al. J Bacteriol, 1991 Aug. PMID 1650339, Free PMC Article
  5. Phenotypic screening of Escherichia coli K-12 Tn5 insertion libraries, using whole-genome oligonucleotide microarrays. Winterberg KM, et al. Appl Environ Microbiol, 2005 Jan. PMID 15640221, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables FMN binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
putative oxidoreductase YdjA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1848125..1848676 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416279.1 putative oxidoreductase YdjA [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416279.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6C9Q8X9
    Conserved Domains (1) summary
    PRK10828
    Location:1 → 183
    PRK10828; putative oxidoreductase; Provisional
Nucleotide Protein
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