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yfgH lipoprotein YfgH [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945709, updated on 17-Dec-2024

Summary

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Official Symbol
yfgH
Official Full Name
lipoprotein YfgH
Primary source
ECOCYC:G7316
Locus tag
b2505
See related
ASAP:ABE-0008250
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2501
Summary
First 21 aa are a type II signal peptide. [More information is available at EcoGene: EG14204].
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Genomic context

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Sequence:
NC_000913.3 (2629792..2630310)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene cyclic di-GMP phosphodiesterase PdeF Neighboring gene nickel/cobalt stress response protein YfgG Neighboring gene nalidixic acid resistance protein YfgI Neighboring gene GMP synthetase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
  2. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
  3. Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Zhang N, et al. Proteomics, 2007 Feb. PMID 17309111
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
is_active_in cell outer membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cell outer membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in outer membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
lipoprotein YfgH

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2629792..2630310
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417000.1 lipoprotein YfgH [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417000.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A066Q2U7, A0A0J2BI47, A0A0J3VSF6, A0A0K5A3Q0, A0A152ZQ66, A0A376SBU6, A0A6N8NA21, A0A829L2U9, A0AAN1VLB3, A0AAV3I3H2, A7ZPU9
    Conserved Domains (1) summary
    cl10470
    Location:5 → 164
    Rick_17kDa_Anti; Glycine zipper 2TM domain
Nucleotide Protein
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