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ycjN putative ABC transporter periplasmic binding protein YcjN [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945696, updated on 3-Dec-2024

Summary

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Official Symbol
ycjN
Official Full Name
putative ABC transporter periplasmic binding protein YcjN
Primary source
ECOCYC:G6648
Locus tag
b1310
See related
ASAP:ABE-0004402
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1305
Summary
First 15 aa are a type II signal peptide. [More information is available at EcoGene: EG13911]. YcjN is a periplasmic binding component of a predicted ATP-dependent sugar transporter. [More information is available at EcoCyc: G6648].
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Genomic context

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Sequence:
NC_000913.3 (1371909..1373201)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene thiosulfate sulfurtransferase PspE Neighboring gene glucosylglycerate phosphorylase Neighboring gene putative ABC transporter membrane subunit YcjO Neighboring gene putative ABC transporter membrane subunit YcjP Neighboring gene D-guloside 3-dehydrogenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Systematic Localization of Escherichia coli Membrane Proteins. Sueki A, et al. mSystems, 2020 Mar 3. PMID 32127419, Free PMC Article
  2. ATP-binding cassette transporters in Escherichia coli. Moussatova A, et al. Biochim Biophys Acta, 2008 Sep. PMID 18634750
  3. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
  4. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
  5. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, et al. J Mol Evol, 1999 Jan. PMID 9873074

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
involved_in transmembrane transport NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
located_in membrane NAS
Non-traceable Author Statement
more info
 PubMed 
located_in outer membrane-bounded periplasmic space IEA
Inferred from Electronic Annotation
more info
  
located_in periplasmic space IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
putative ABC transporter periplasmic binding protein YcjN

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1371909..1373201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415826.1 putative ABC transporter periplasmic binding protein YcjN [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415826.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8T5ZGN8
    Conserved Domains (1) summary
    COG1653
    Location:1 → 430
    UgpB; ABC-type glycerol-3-phosphate transport system, periplasmic component [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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