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ldtC L,D-transpeptidase LdtC [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945666, updated on 3-Dec-2024

Summary

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Official Symbol
ldtC
Official Full Name
L,D-transpeptidase LdtC
Primary source
ECOCYC:G6571
Locus tag
b1113
See related
ASAP:ABE-0003760
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1099; ycfS
Summary
ErfK family. [More information is available at EcoGene: EG13437]. YcfS is an L,D-transpeptidase responsible removal of the D-alanine residue of peptidoglycan tetrapeptide stems and attachment of the lysine residue of Braun lipoprotein to the meso-diaminopimelyl (DAP) residue of the resulting tripeptide. [More information is available at EcoCyc: G6571].
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Genomic context

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Sequence:
NC_000913.3 (1169412..1170374, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional repressor ComR Neighboring gene DUF1471 domain-containing multiple stress resistance outer membrane protein BhsA Neighboring gene ncRNA Neighboring gene transcription-repair coupling factor Neighboring gene inner membrane protein YcfT

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Insight from TonB hybrid proteins into the mechanism of iron transport through the outer membrane. Kaserer WA, et al. J Bacteriol, 2008 Jun. PMID 18390658, Free PMC Article
  2. Role of the extracytoplasmic function protein family sigma factor RpoE in metal resistance of Escherichia coli. Egler M, et al. J Bacteriol, 2005 Apr. PMID 15774872, Free PMC Article
  3. Global impact of sdiA amplification revealed by comprehensive gene expression profiling of Escherichia coli. Wei Y, et al. J Bacteriol, 2001 Apr. PMID 11244066, Free PMC Article
  4. pH regulates genes for flagellar motility, catabolism, and oxidative stress in Escherichia coli K-12. Maurer LM, et al. J Bacteriol, 2005 Jan. PMID 15601715, Free PMC Article
  5. Identification of the L,D-transpeptidases responsible for attachment of the Braun lipoprotein to Escherichia coli peptidoglycan. Magnet S, et al. J Bacteriol, 2007 May. PMID 17369299, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Escherichia coli Ldt(fm) homologues are responsible for the attachment of the Braun lipoprotein to murein
    Title: Identification of the L,D-transpeptidases responsible for attachment of the Braun lipoprotein to Escherichia coli peptidoglycan.
Submit: New GeneRIF Correction

Pathways from PubChem

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General protein information

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Preferred Names
L,D-transpeptidase LdtC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1169412..1170374 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415631.1 L,D-transpeptidase LdtC [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415631.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7T2IZW6
    Conserved Domains (1) summary
    PRK10260
    Location:30 → 308
    PRK10260; L,D-transpeptidase; Provisional
Nucleotide Protein
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