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pdeI putative c-di-GMP phosphodiesterase PdeI [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945462, updated on 3-Dec-2024

Summary

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Official Symbol
pdeI
Official Full Name
putative c-di-GMP phosphodiesterase PdeI
Primary source
ECOCYC:G6433
Locus tag
b0833
See related
ASAP:ABE-0002839
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0823; yliE
Summary
YliE has a C-terminal cyclic-di-GMP phosphodiesterase EAL domain. [More information is available at EcoGene: EG13476].
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Genomic context

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Sequence:
NC_000913.3 (872979..875327)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene glutathione ABC transporter membrane subunit GsiC Neighboring gene glutathione ABC transporter membrane subunit GsiD Neighboring gene putative diguanylate cyclase DgcI Neighboring gene ribosomal protein S12 methylthiotransferase RimO

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Uncovering the gene knockout landscape for improved lycopene production in E. coli. Alper H, et al. Appl Microbiol Biotechnol, 2008 Apr. PMID 18239914
  2. Second messenger signalling governs Escherichia coli biofilm induction upon ribosomal stress. Boehm A, et al. Mol Microbiol, 2009 Jun. PMID 19460094
  3. Expression and Genetic Activation of Cyclic Di-GMP-Specific Phosphodiesterases in Escherichia coli. Reinders A, et al. J Bacteriol, 2016 Feb 1. PMID 26553851, Free PMC Article
  4. The RNA binding protein CsrA controls cyclic di-GMP metabolism by directly regulating the expression of GGDEF proteins. Jonas K, et al. Mol Microbiol, 2008 Oct. PMID 18713317, Free PMC Article
  5. Gene expression patterns and differential input into curli fimbriae regulation of all GGDEF/EAL domain proteins in Escherichia coli. Sommerfeldt N, et al. Microbiology (Reading), 2009 Apr. PMID 19332833

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables cyclic-guanylate-specific phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
  
enables cyclic-guanylate-specific phosphodiesterase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative c-di-GMP phosphodiesterase PdeI

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    872979..875327
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415354.1 putative c-di-GMP phosphodiesterase PdeI [Escherichia coli str. K-12 substr. MG1655]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAI9GU65
    Conserved Domains (2) summary
    smart00052
    Location:532 → 770
    EAL; Putative diguanylate phosphodiesterase
    pfam17153
    Location:35 → 150
    CHASE9; Periplasmic sensor domain, extracellular
Nucleotide Protein
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