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ybiR putative transporter YbiR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945438, updated on 17-Dec-2024

Summary

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Official Symbol
ybiR
Official Full Name
putative transporter YbiR
Primary source
ECOCYC:G6421
Locus tag
b0818
See related
ASAP:ABE-0002795
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0808
Summary
IT (Ion Transporter) superfamily (Prakash, 2003). [More information is available at EcoGene: EG13323]. Expression of ybiR was reduced in response to cold shock . [More information is available at EcoCyc: G6421].
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Genomic context

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Sequence:
NC_000913.3 (853647..854765)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene phosphoethanolamine transferase OpgE Neighboring gene ncRNA Neighboring gene small protein MntS Neighboring gene DNA-binding transcriptional dual regulator MntR Neighboring gene L,D-transpeptidase LdtB Neighboring gene putative ATP-binding protein YbiT

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide transcriptional analysis of the cold shock response in wild-type and cold-sensitive, quadruple-csp-deletion strains of Escherichia coli. Phadtare S, et al. J Bacteriol, 2004 Oct. PMID 15466053, Free PMC Article
  2. Domain structure and pore loops in the 2-hydroxycarboxylate transporter family. Lolkema JS. J Mol Microbiol Biotechnol, 2006. PMID 17114896
  3. Sequence and hydropathy profile analysis of two classes of secondary transporters. Lolkema JS, et al. Mol Membr Biol, 2005 May-Jun. PMID 16096261
  4. The ion transporter superfamily. Prakash S, et al. Biochim Biophys Acta, 2003 Dec 3. PMID 14643936
  5. Classification of 29 families of secondary transport proteins into a single structural class using hydropathy profile analysis. Lolkema JS, et al. J Mol Biol, 2003 Apr 11. PMID 12662917

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative transporter YbiR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    853647..854765
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415339.1 putative transporter YbiR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415339.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376FPL8
    Conserved Domains (1) summary
    cd01117
    Location:8 → 366
    YbiR_permease; Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate ...
Nucleotide Protein
Heading Accession and Version

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