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ybdN putative PAPS reductase/DUF3440 domain-containing protein YbdN [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945205, updated on 17-Dec-2024

Summary

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Official Symbol
ybdN
Official Full Name
putative PAPS reductase/DUF3440 domain-containing protein YbdN
Primary source
ECOCYC:G6331
Locus tag
b0602
See related
ASAP:ABE-0002073
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0596
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Genomic context

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Sequence:
NC_000913.3 (635349..636569, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene hydroxycarboxylate dehydrogenase A Neighboring gene methionine transaminase Neighboring gene ParB-like nuclease domain-containing protein YbdM Neighboring gene putative LysR family DNA-binding transcriptional regulator YbdO Neighboring gene protein sulfenic acid reductase and chaperone DsbG

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  2. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
  3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cellular response to oxygen levels IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
putative PAPS reductase/DUF3440 domain-containing protein YbdN

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    635349..636569 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415135.1 putative PAPS reductase/DUF3440 domain-containing protein YbdN [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415135.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A418GJA8
    Conserved Domains (1) summary
    COG3969
    Location:1 → 400
    YbdN; Predicted phosphoadenosine phosphosulfate sulfurtransferase, contains C-terminal DUF3440 domain [General function prediction only]
Nucleotide Protein
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