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rclC DUF417 domain-containing inner membrane protein RclC [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 944974, updated on 17-Dec-2024

Summary

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Official Symbol
rclC
Official Full Name
DUF417 domain-containing inner membrane protein RclC
Primary source
ECOCYC:G6171
Locus tag
b0301
See related
ASAP:ABE-0001038
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0301; ykgB
Summary
Membrane topology predictions using experimentally determined C terminus locations indicate that YkgB has 3 transmembrane helices and the C-terminus is located in the cytoplasm . [More information is available at EcoCyc: G6171].
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Genomic context

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Sequence:
NC_000913.3 (317726..318319, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene IS3 element protein InsF Neighboring gene pseudo Neighboring gene pseudo Neighboring gene DUF1471 domain-containing protein RclB Neighboring gene cupric reductase RclA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The RclR protein is a reactive chlorine-specific transcription factor in Escherichia coli. Parker BW, et al. J Biol Chem, 2013 Nov 8. PMID 24078635, Free PMC Article
  2. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
  3. Experimentally based topology models for E. coli inner membrane proteins. Rapp M, et al. Protein Sci, 2004 Apr. PMID 15044727, Free PMC Article
  4. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
  5. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
involved_in response to hypochlorite IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within response to hypochlorite IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to hypochlorite IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DUF417 domain-containing inner membrane protein RclC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    317726..318319 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414835.2 DUF417 domain-containing inner membrane protein RclC [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414835.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1X3JKZ3
    Conserved Domains (1) summary
    COG3059
    Location:1 → 186
    YkgB; Uncharacterized membrane protein YkgB [Function unknown]
Nucleotide Protein
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