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LOC9329972 non-specific lipid-transfer protein-like protein At5g64080 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9329972, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9329972
Gene description
non-specific lipid-transfer protein-like protein At5g64080
Locus tag
ARALYDRAFT_681401
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9329972 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302555.1 (17760739..17761897)

NW_003302555.1Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor ERF055 Neighboring gene uncharacterized WD repeat-containing protein C2A9.03 Neighboring gene uncharacterized LOC110225032 Neighboring gene 3-isopropylmalate dehydrogenase 1, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302555 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
non-specific lipid-transfer protein-like protein At5g64080
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302555.1 Reference v.1.0 Primary Assembly

    Range
    17760739..17761897
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002891163.2 → XP_002891209.1  non-specific lipid-transfer protein-like protein At5g64080 isoform X2

    See identical proteins and their annotated locations for XP_002891209.1

    UniProtKB/TrEMBL
    D7KM04
    Conserved Domains (1) summary
    cd00010
    Location:52 → 115
    AAI_LTSS; AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar ...

  2. XM_021013842.1 → XP_020869501.1  non-specific lipid-transfer protein-like protein At5g64080 isoform X1

    Conserved Domains (1) summary
    cd00010
    Location:52 → 115
    AAI_LTSS; Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. ...
Nucleotide Protein
Heading Accession and Version

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