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LOC9328112 U-box domain-containing protein 54 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9328112, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9328112
Gene description
U-box domain-containing protein 54
Locus tag
ARALYDRAFT_677735
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9328112 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302555.1 (226193..228838)

NW_003302555.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110225203 Neighboring gene protein PAIR1 Neighboring gene U-box domain-containing protein 56 Neighboring gene putative U-box domain-containing protein 55

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302555 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U-box domain-containing protein 54
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302555.1 Reference v.1.0 Primary Assembly

    Range
    226193..228838
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002889310.2 → XP_002889356.1  U-box domain-containing protein 54

    See identical proteins and their annotated locations for XP_002889356.1

    UniProtKB/TrEMBL
    D7KP83
    Conserved Domains (2) summary
    smart00504
    Location:237 → 300
    Ubox; Modified RING finger domain
    cd01989
    Location:5 → 154
    STK_N; The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein ...
Nucleotide Protein
Heading Accession and Version

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