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LOC9321052 mini-ribonuclease 3 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9321052, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9321052
Gene description
mini-ribonuclease 3
Locus tag
ARALYDRAFT_478773
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9321052 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302553.1 (5617113..5619217)

NW_003302553.1Genomic Context describing neighboring genes Neighboring gene PRA1 family protein F3 Neighboring gene 3-epi-6-deoxocathasterone 23-monooxygenase Neighboring gene beta-galactosidase 1 Neighboring gene putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial Neighboring gene transmembrane 9 superfamily member 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302553 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ribonuclease III activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC9321052

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302553.1 Reference v.1.0 Primary Assembly

    Range
    5617113..5619217
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002882795.2 → XP_002882841.1  uncharacterized protein LOC9321052 isoform X2

    See identical proteins and their annotated locations for XP_002882841.1

    UniProtKB/TrEMBL
    D7L1I0, D7MWR5
    Conserved Domains (1) summary
    cl00258
    Location:96 → 209
    RIBOc; RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in ...

  2. XM_021032892.1 → XP_020888551.1  uncharacterized protein LOC9321052 isoform X1

    Conserved Domains (1) summary
    cl00258
    Location:96 → 209
    RIBOc; Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional ...
Nucleotide Protein
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