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LOC9317617 protein NRT1/ PTR FAMILY 5.6 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9317617, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9317617
Gene description
protein NRT1/ PTR FAMILY 5.6
Locus tag
ARALYDRAFT_482796
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9317617 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302552.1 (18332274..18336916, complement)

NW_003302552.1Genomic Context describing neighboring genes Neighboring gene protein MIZU-KUSSEI 1 Neighboring gene mitochondrial substrate carrier family protein B Neighboring gene cell division control protein 48 homolog C Neighboring gene uncharacterized LOC9315782

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302552 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dipeptide transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tripeptide transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dipeptide transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein NRT1/ PTR FAMILY 5.6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302552.1 Reference v.1.0 Primary Assembly

    Range
    18332274..18336916 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002881505.2 → XP_002881551.1  protein NRT1/ PTR FAMILY 5.6

    See identical proteins and their annotated locations for XP_002881551.1

    UniProtKB/TrEMBL
    D7LKQ5
    Conserved Domains (1) summary
    cl21472
    Location:109 → 529
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
Nucleotide Protein
Heading Accession and Version

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