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LOC9316255 UTP:RNA uridylyltransferase 1 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9316255, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9316255
Gene description
UTP:RNA uridylyltransferase 1
Locus tag
ARALYDRAFT_483698
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9316255 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302552.1 (22200223..22203330)

NW_003302552.1Genomic Context describing neighboring genes Neighboring gene probable carboxylesterase 8 Neighboring gene probable carboxylesterase 9 Neighboring gene glyoxylate/hydroxypyruvate reductase HPR3 Neighboring gene histone deacetylase complex subunit SAP18

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302552 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA uridylyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA 3' uridylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UTP:RNA uridylyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302552.1 Reference v.1.0 Primary Assembly

    Range
    22200223..22203330
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002880142.2 → XP_002880188.1  UTP:RNA uridylyltransferase 1

    See identical proteins and their annotated locations for XP_002880188.1

    UniProtKB/TrEMBL
    D7LCL1
    Conserved Domains (3) summary
    cd05402
    Location:449 → 559
    NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
    COG5260
    Location:381 → 733
    TRF4; DNA polymerase sigma [Replication, recombination and repair]
    pfam03828
    Location:648 → 707
    PAP_assoc; Cid1 family poly A polymerase
Nucleotide Protein
Heading Accession and Version

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