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LOC9315754 60S ribosomal protein L36-2 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9315754, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9315754
Gene description
60S ribosomal protein L36-2
Locus tag
ARALYDRAFT_321464
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9315754 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302552.1 (18044312..18045333, complement)

NW_003302552.1Genomic Context describing neighboring genes Neighboring gene beta-glucuronosyltransferase GlcAT14C Neighboring gene transcription factor AS1 Neighboring gene dof zinc finger protein DOF2.4 Neighboring gene cyclin-dependent protein kinase inhibitor SMR12 Neighboring gene actin-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302552 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
60S ribosomal protein L36-2
Names
60S ribosomal protein L36

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302552.1 Reference v.1.0 Primary Assembly

    Range
    18044312..18045333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002881474.2 → XP_002881520.1  60S ribosomal protein L36-2

    See identical proteins and their annotated locations for XP_002881520.1

    UniProtKB/TrEMBL
    D7LJV2, D7LUL9
    Conserved Domains (1) summary
    pfam01158
    Location:7 → 101
    Ribosomal_L36e; Ribosomal protein L36e

  2. XM_021030178.1 → XP_020885837.1  60S ribosomal protein L36-2

    UniProtKB/TrEMBL
    D7LJV2, D7LUL9
    Conserved Domains (1) summary
    pfam01158
    Location:7 → 101
    Ribosomal_L36e; Ribosomal protein L36e
Nucleotide Protein
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