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LOC9312326 ABC transporter F family member 4 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9312326, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9312326
Gene description
ABC transporter F family member 4
Locus tag
ARALYDRAFT_906864
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATGCN4
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Genomic context

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See LOC9312326 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302551.1 (17064415..17067775)

NW_003302551.1Genomic Context describing neighboring genes Neighboring gene F-box/kelch-repeat protein At5g51250 Neighboring gene ABC transporter F family member 4 Neighboring gene uncharacterized LOC9312327 Neighboring gene histone H2A variant 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302551 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ABC transporter F family member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302551.1 Reference v.1.0 Primary Assembly

    Range
    17064415..17067775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021024601.1 → XP_020880260.1  ABC transporter F family member 4

    UniProtKB/TrEMBL
    D7LUV2
    Conserved Domains (1) summary
    cl26602
    Location:45 → 714
    SunT; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

  2. XM_002876212.2 → XP_002876258.1  ABC transporter F family member 4

    See identical proteins and their annotated locations for XP_002876258.1

    UniProtKB/TrEMBL
    D7LUV2
    Conserved Domains (1) summary
    cl26602
    Location:45 → 714
    SunT; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Nucleotide Protein
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