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LOC9310567 serine/threonine-protein phosphatase 2A activator [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9310567, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9310567
Gene description
serine/threonine-protein phosphatase 2A activator
Locus tag
ARALYDRAFT_489715
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9310567 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302550.1 (17795357..17797475, complement)

NW_003302550.1Genomic Context describing neighboring genes Neighboring gene putative defensin-like protein 27 Neighboring gene F-box protein FBW2 Neighboring gene uncharacterized LOC110227387 Neighboring gene meiosis-specific protein ASY2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302550 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine phosphatase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitotic spindle organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of protein phosphatase type 2A complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein phosphatase 2A activator

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302550.1 Reference v.1.0 Primary Assembly

    Range
    17795357..17797475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002874454.2 → XP_002874500.1  serine/threonine-protein phosphatase 2A activator isoform X1

    See identical proteins and their annotated locations for XP_002874500.1

    UniProtKB/TrEMBL
    D7M7Q5
    Conserved Domains (1) summary
    pfam03095
    Location:98 → 391
    PTPA; Phosphotyrosyl phosphate activator (PTPA) protein

  2. XM_021021815.1 → XP_020877474.1  serine/threonine-protein phosphatase 2A activator isoform X2

    Conserved Domains (1) summary
    pfam03095
    Location:98 → 388
    PTPA; Phosphotyrosyl phosphate activator (PTPA) protein
Nucleotide Protein
Heading Accession and Version

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