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LOC9309455 ubiquitin [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9309455, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9309455
Gene description
ubiquitin
Locus tag
ARALYDRAFT_908866
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9309455 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302550.1 (3681143..3681885, complement)

NW_003302550.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110227713 Neighboring gene uncharacterized LOC110227714 Neighboring gene uncharacterized LOC9309456 Neighboring gene NAD-dependent protein deacylase SRT2 Neighboring gene RNA polymerase II transcriptional coactivator KIWI

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302550 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tag activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in modification-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302550.1 Reference v.1.0 Primary Assembly

    Range
    3681143..3681885 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002873341.2 → XP_002873387.1  ubiquitin

    See identical proteins and their annotated locations for XP_002873387.1

    UniProtKB/TrEMBL
    D7M214
    Conserved Domains (2) summary
    smart00213
    Location:1 → 74
    UBQ; Ubiquitin homologues
    cl00155
    Location:1 → 78
    UBQ; Ubiquitin-like proteins
Nucleotide Protein
Heading Accession and Version

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