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LOC9308807 4-coumarate--CoA ligase-like 7 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9308807, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9308807
Gene description
4-coumarate--CoA ligase-like 7
Locus tag
ARALYDRAFT_490166
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9308807 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302550.1 (22836046..22838578)

NW_003302550.1Genomic Context describing neighboring genes Neighboring gene equilibrative nucleotide transporter 3-like Neighboring gene uncharacterized LOC9310902 Neighboring gene transcription factor bHLH114 Neighboring gene oxygen-evolving enhancer protein 3-2, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302550 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables CoA-ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
4-coumarate--CoA ligase-like 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302550.1 Reference v.1.0 Primary Assembly

    Range
    22836046..22838578
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002872692.2 → XP_002872738.1  4-coumarate--CoA ligase-like 7

    See identical proteins and their annotated locations for XP_002872738.1

    UniProtKB/TrEMBL
    D7M1Y8
    Conserved Domains (2) summary
    cd05904
    Location:21 → 536
    4CL; 4-Coumarate-CoA Ligase (4CL)
    PLN02246
    Location:11 → 544
    PLN02246; 4-coumarate--CoA ligase
Nucleotide Protein
Heading Accession and Version

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