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LOC9305446 probable LRR receptor-like serine/threonine-protein kinase At4g30520 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9305446, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9305446
Gene description
probable LRR receptor-like serine/threonine-protein kinase At4g30520
Locus tag
ARALYDRAFT_656995
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9305446 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302549.1 (4720767..4724256)

NW_003302549.1Genomic Context describing neighboring genes Neighboring gene gamma-glutamyl peptidase 1 Neighboring gene uncharacterized LOC110226677 Neighboring gene autophagy-related protein 18b Neighboring gene transmembrane protein 208 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302549 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable LRR receptor-like serine/threonine-protein kinase At4g30520
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302549.1 Reference v.1.0 Primary Assembly

    Range
    4720767..4724256
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002867296.2 → XP_002867342.1  probable LRR receptor-like serine/threonine-protein kinase At4g30520

    See identical proteins and their annotated locations for XP_002867342.1

    UniProtKB/TrEMBL
    D7MBV1
    Conserved Domains (7) summary
    smart00219
    Location:306 → 572
    TyrKc; Tyrosine kinase, catalytic domain
    cd00116
    Location:124 → 187
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:103 → 126
    LRR_RI; leucine-rich repeat [structural motif]
    pfam08263
    Location:35 → 74
    LRRNT_2; Leucine rich repeat N-terminal domain
    pfam12799
    Location:101 → 138
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:125 → 185
    LRR_8; Leucine rich repeat
    cl21453
    Location:309 → 575
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
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